Tutorial

• Basics
  • Purpose
  • Installation
  • What are Phewas codes?
  • File Formats
    • Phenotype File
    • Genotype File
• Research Tools
  • Using pyPheWAS Research Tools
  • Regression Types
  • pyPhewasLookup
  • pyPhewasModel
  • pyPhewasPlot
  • pyPhewasPipeline
• Data Preparation
  • generateGroups (Grouping Tool)
  • convertEventToAge (Convert event dates to ages)
  • censorData (ICD/CPT date censoring)
  • maximizeControls (Case/Control matching)
  • createGenotypeFile (Create a group file)